from pheno_utils import PhenoLoader016-blood_tests
Blood tests dataset
The lab tests in this data set of the Human Phenotype Project are based on tests performed to participants in the community as part of their regular medical care at their HMO (Health Maintenance Organization). Participants are asked to upload their blood/urine tests done at their HMOs from previous years. These tests range from the very common CBC and chemistry tests, Vitamins levels to the standard PCRs for infectious diseases all the way to rare tests requiring the user to measure urine for 24h.
Data availability:
The information is stored in 1 parquet file blood_tests.parquet.
pl = PhenoLoader('blood_tests')
plPhenoLoader for blood_tests with
67 fields
2 tables: ['blood_tests', 'age_sex']Data dictionary
pl.dict| folder_id | feature_set | field_string | description_string | relative_location | bulk_dictionary | field_type | data_coding | stability | units | sampling_rate | bulk_file_extension | strata | sexed | array | debut | completed | transformation | list_of_tags | pandas_dtype | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | ||||||||||||||||||||
| hmo | 16 | blood_tests | HMO | One of 4 Isreali HMOs | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| collection_date | 16 | blood_tests | Collection date | Collection date | blood_tests/blood_tests.parquet | NaN | Date | NaN | Accruing | NaN | NaN | NaN | Auxiliary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | datetime64[ns] |
| bt__albumin_float_value | 16 | blood_tests | Blood test - Albumin (Numerical) | Albumin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | g/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__alkaline_phosphatase_float_value | 16 | blood_tests | Blood test - Alkaline Phosphatase (Numerical) | ALKP - Alkaline Phosphatase | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | u/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__alt_float_value | 16 | blood_tests | Blood test - ALT (Numerical) | ALT (GPT) - Alanine Aminotransferease | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | u/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__ast_float_value | 16 | blood_tests | Blood test - AST (Numerical) | AST (GOT) - Aspartate Aminotransferase | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | u/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__basophils_%_float_value | 16 | blood_tests | Blood test - Basophils % (Numerical) | Baso % - Basophils percent | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__basophils_abs_float_value | 16 | blood_tests | Blood test - Basophils # (Numerical) | Baso # - Basophils absolute | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__calcium_float_value | 16 | blood_tests | Blood test - Calcium (Numerical) | Ca - Calcium | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__creatinine_float_value | 16 | blood_tests | Blood test - Creatinine (Numerical) | Creatinine | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__direct_bilirubin_categorical_value | 16 | blood_tests | Blood test - Direct Bilirubin (Categorical) | Bilirubin Direct/Conjugated | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__direct_bilirubin_float_value | 16 | blood_tests | Blood test - Direct Bilirubin (Numerical) | Bilirubin Direct/Conjugated | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__eosinophils_%_float_value | 16 | blood_tests | Blood test - Eosinophils % (Numerical) | Eos % - eosinophils percent | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__eosinophils_abs_float_value | 16 | blood_tests | Blood test - Eosinophils # (Numerical) | Eos # - eosinophils absolute | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__estradiol_categorical_value | 16 | blood_tests | Blood test - Estradiol (Categorical) | E2 - Estradiol | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__estradiol_float_value | 16 | blood_tests | Blood test - Estradiol (Numerical) | E2 - Estradiol | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | pmol/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__ferritin_categorical_value | 16 | blood_tests | Blood test - Ferritin (Categorical) | Ferritin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__ferritin_float_value | 16 | blood_tests | Blood test - Ferritin (Numerical) | Ferritin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | ng/ml | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__ggt_float_value | 16 | blood_tests | Blood test - GGT (Numerical) | GGT - gama-Glutamyl Transpeptidase | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | u/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__glucose_float_value | 16 | blood_tests | Blood test - Glucose (Numerical) | Glucose | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__hba1c_float_value | 16 | blood_tests | Blood test - HbA1C (Numerical) | HbA1C % | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__hdl_cholesterol_float_value | 16 | blood_tests | Blood test - HDL Cholesterol (Numerical) | HDL Cholesterol | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__hematocrit_float_value | 16 | blood_tests | Blood test - Hematocrit (Numerical) | HCT - Hematocrit | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__hemoglobin_float_value | 16 | blood_tests | Blood test - Hemoglobin (Numerical) | Hb - Hemoglobin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | g/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__ldl_cholesterol_float_value | 16 | blood_tests | Blood test - LDL Cholesterol (Numerical) | LDL Cholesterol | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__lymphocytes_%_float_value | 16 | blood_tests | Blood test - Lymphocytes % (Numerical) | Lymp % - Lymphocytes percent | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__lymphocytes_abs_float_value | 16 | blood_tests | Blood test - Lymphocytes # (Numerical) | Lymp # - Lymphocytes absolute | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__mch_float_value | 16 | blood_tests | Blood test - MCH (Numerical) | MCH - Mean cell Hemoglobin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | pg/cell | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__mchc_float_value | 16 | blood_tests | Blood test - MCHC (Numerical) | MCHC - Mean cell Hemoglobin concentration | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | g/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__mcv_float_value | 16 | blood_tests | Blood test - MCV (Numerical) | MCV - Mean Corpuscular Volume or Mean cell volume | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | fl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__monocytes_%_float_value | 16 | blood_tests | Blood test - Monocytes % (Numerical) | Mono % - Monoctypes percent | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__monocytes_abs_float_value | 16 | blood_tests | Blood test - Monocytes # (Numerical) | Mono % - Monoctypes absolute | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__mpv_float_value | 16 | blood_tests | Blood test - MPV (Numerical) | MPV - Mean Platelet Volume | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | fl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__neutrophils_%_float_value | 16 | blood_tests | Blood test - Neutrophils % (Numerical) | Neut % - Neutrophils percent | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__neutrophils_abs_float_value | 16 | blood_tests | Blood test - Neutrophils # (Numerical) | Neut # - Neutrophils absolute | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__non_hdl_cholesterol_float_value | 16 | blood_tests | Blood test - Non HDL Cholesterol (Numerical) | Non HDL Cholesterol | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__phosphore_float_value | 16 | blood_tests | Blood test - Phosphore (Numerical) | P - Phosphore | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__platelets_float_value | 16 | blood_tests | Blood test - Platelets (Numerical) | PLT - Platelets | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__potassium_float_value | 16 | blood_tests | Blood test - Potassium (Numerical) | K+ - Potassium | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mmol/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__rbc_float_value | 16 | blood_tests | Blood test - RBC (Numerical) | RBC - Red Blood Cells | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | m/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__rdw_float_value | 16 | blood_tests | Blood test - RDW (Numerical) | RDW - Red Blood Cell Distribution Width | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | % | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__rheumatoid_factor_categorical_value | 16 | blood_tests | Blood test - Rheumatoid Factor (Categorical) | Rheumatoid Factor Quantit | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__rheumatoid_factor_float_value | 16 | blood_tests | Blood test - Rheumatoid Factor (Numerical) | Rheumatoid Factor Quantit | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | iu/ml | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__sodium_float_value | 16 | blood_tests | Blood test - Sodium (Numerical) | Na - Sodium | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mmol/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__testosterone_total_categorical_value | 16 | blood_tests | Blood test - Testosterone Total (Categorical) | Total Testosterone | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__testosterone_total_float_value | 16 | blood_tests | Blood test - Testosterone Total (Numerical) | Total Testosterone | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | nmol/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__total_bilirubin_categorical_value | 16 | blood_tests | Blood test - Total Bilirubin (Categorical) | Total Billirubin | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__total_bilirubin_float_value | 16 | blood_tests | Blood test - Total Bilirubin (Numerical) | Total Billirubin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__total_cholesterol_float_value | 16 | blood_tests | Blood test - Total Cholesterol (Numerical) | Total Cholesterol | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__total_protein_float_value | 16 | blood_tests | Blood test - Total Protein (Numerical) | Total Protien | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | g/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__triglycerides_float_value | 16 | blood_tests | Blood test - Triglycerides (Numerical) | Triglycerides | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__tsh_categorical_value | 16 | blood_tests | Blood test - TSH (Categorical) | TSH - Thyroid-stimulating hormone | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__tsh_float_value | 16 | blood_tests | Blood test - TSH (Numerical) | TSH - Thyroid-stimulating hormone | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | miu/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__urate_float_value | 16 | blood_tests | Blood test - Urate (Numerical) | Urate / Uric Acid | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__urea_float_value | 16 | blood_tests | Blood test - Urea (Numerical) | Urea | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__vitamin_b12_categorical_value | 16 | blood_tests | Blood test - Vitamin B12 (Categorical) | Vitamin B12 - Cobalamin | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__vitamin_b12_float_value | 16 | blood_tests | Blood test - Vitamin B12 (Numerical) | Vitamin B12 - Cobalamin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | pg/ml | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__vitamin_d_categorical_value | 16 | blood_tests | Blood test - Vitamin D (Categorical) | Vitamin D | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| bt__vitamin_d_float_value | 16 | blood_tests | Blood test - Vitamin D (Numerical) | Vitamin D | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | ng/ml | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| bt__wbc_float_value | 16 | blood_tests | Blood test - WBC (Numerical) | WBC - White blood cells | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | k/ul | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| urine__acr_categorical_value | 16 | blood_tests | Urine test - ACR (Categorical) | Urine ACR - Albumin / Creatinine Ratio | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| urine__acr_float_value | 16 | blood_tests | Urine test - ACR (Numerical) | Urine ACR - Albumin / Creatinine Ratio | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/g creatinine | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| urine__creatinine_float_value | 16 | blood_tests | Urine test - Creatinine (Numerical) | Creatinine | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/dl | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |
| urine__microalbumin_categorical_value | 16 | blood_tests | Urine test - Microalbumin (Categorical) | Microalbumin | blood_tests/blood_tests.parquet | NaN | Categorical (single) | NaN | Accruing | NaN | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | category |
| urine__microalbumin_float_value | 16 | blood_tests | Urine test - Microalbumin (Numerical) | Microalbumin | blood_tests/blood_tests.parquet | NaN | Continuous | NaN | Accruing | mg/l | NaN | NaN | Primary | Both sexes | Single | 2015-01-01 | NaN | NaN | Blood Tests | float |