052-family_history

Family history

The Human Phenotype Project conducts comprehensive data collection through online surveys, where participants voluntarily provide information on various aspects influencing their health. This includes information about a participant’s family history, captured through two lifestyle surveys and the Initial Medical Survey.

These lifestyle surveys are modeled after the UK Biobank’s touch screen questionnaire. Participants receive the full version via email to complete on the Zoho platform, either before or after their baseline visit. A shorter, follow-up version of the questionnaire is then filled out by participants during subsequent visits.

Data availability:

The information is stored in 2 parquet files: initial_medical.parquet and ukbb.parquet. The ukbb.parquet contains questions asked in our lifestyle surveys at the baseline and follow up stages.

from pheno_utils import PhenoLoader

pl = PhenoLoader('family_history')
pl

PhenoLoader for family_history with
60 fields
3 tables: ['initial_medical', 'ukbb', 'age_sex']

Data dictionary

pl.dict

	folder_id	feature_set	field_string	relative_location	bulk_file_extension	bulk_dictionary	description_string	field_type	array	pandas_dtype	stability	units	sampling_rate	strata	sexed	debut	completed	data_coding
tabular_field_name
sudden_death_family	52	initial_medical	Sudden death family	family_history/initial_medical.parquet	NaN	NaN	Has one or more of your close family members d...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	21
family_history	52	initial_medical	Family history	family_history/initial_medical.parquet	NaN	NaN	Has one or more of your close family members s...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	052_01
hypertension_family_number	52	initial_medical	Hypertension family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have hig...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
hyperlipidemia_family_number	52	initial_medical	Hyperlipidemia family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have ele...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
type_1_diabetes_family_number	52	initial_medical	Type 1 diabetes family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have typ...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
type_2_diabetes_family_number	52	initial_medical	Type 2 diabetes family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have typ...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
stroke_family_number	52	initial_medical	Stroke family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have had...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
kidney_disease_dialysis_family_number	52	initial_medical	Kidney disease dialysis family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have kid...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
autoimmune_diseases_family_number	52	initial_medical	Autoimmune diseases family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have art...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
hypercoagulation_family_number	52	initial_medical	Hypercoagulation family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have hyp...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
clotting_family_number	52	initial_medical	Clotting family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have a c...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
crohn_family_number	52	initial_medical	Crohn family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have inf...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
celiac_family_number	52	initial_medical	Celiac family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have cel...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
dementia_under_60_family_number	52	initial_medical	Dementia under 60 family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have dem...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
parkinson_family_number	52	initial_medical	Parkinson family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have a m...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
asthma_family_number	52	initial_medical	Asthma family number	family_history/initial_medical.parquet	NaN	NaN	How many of your close family members have ast...	Integer	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	NaN
cancer_type_family	52	initial_medical	Cancer type family	family_history/initial_medical.parquet	NaN	NaN	Specify the type of cancer	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	2/26/2020	NaN	052_02
collection_timestamp	52	initial_medical	Collection time	family_history/initial_medical.parquet	NaN	NaN	Collection time	Datetime	Single	datetime64[ns, Asia/Jerusalem]	Accruing	NaN	NaN	Collection time	Both sexes	2/26/2020	NaN	NaN
collection_date	52	initial_medical	Collection date	family_history/initial_medical.parquet	NaN	NaN	Collection date	Date	Single	datetime64[ns]	Accruing	NaN	NaN	Collection time	Both sexes	2/26/2020	NaN	NaN
timezone	52	initial_medical	Timezone	family_history/initial_medical.parquet	NaN	NaN	Timezone	Categorical (single)	Single	string	Accruing	NaN	NaN	Collection time	Both sexes	2/26/2020	NaN	NaN
early_life_breastfeeding	52	ukbb	Breastfed as a baby	family_history/ukbb.parquet	NaN	NaN	Were you breastfed when you were a baby?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
early_life_comparative_body_weight	52	ukbb	Comparative body size at age 10	family_history/ukbb.parquet	NaN	NaN	When you were 10 years old, compared to averag...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100428
early_life_comparative_body_height	52	ukbb	Comparative height size at age 10	family_history/ukbb.parquet	NaN	NaN	When you were 10 years old, compared to averag...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100429
early_life_handedness	52	ukbb	Handedness (chirality/laterality)	family_history/ukbb.parquet	NaN	NaN	Are you right or left handed?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100430
early_life_adopted	52	ukbb	Adopted as a child	family_history/ukbb.parquet	NaN	NaN	Were you adopted as a child?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
early_life_multiple_birth	52	ukbb	Part of a multiple birth	family_history/ukbb.parquet	NaN	NaN	Are you a twin, triplet or other multiple birth?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
early_life_mother_smoking	52	ukbb	Maternal smoking around birth	family_history/ukbb.parquet	NaN	NaN	Did your mother smoke regularly around the tim...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
family_history_father_alive	52	ukbb	Father still alive	family_history/ukbb.parquet	NaN	NaN	Is your father still alive?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
family_history_adopted_father_alive	52	ukbb	Adopted father still alive	family_history/ukbb.parquet	NaN	NaN	Is your ADOPTED father still alive?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
family_history_current_father_age	52	ukbb	Father's age	family_history/ukbb.parquet	NaN	NaN	What is his age now?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_current_adopted_father_age	52	ukbb	Father's age	family_history/ukbb.parquet	NaN	NaN	What is his age now?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_father_age_passing	52	ukbb	Father's age at death	family_history/ukbb.parquet	NaN	NaN	What was his age when he died?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_adopted_father_age_passing	52	ukbb	Father's age at death	family_history/ukbb.parquet	NaN	NaN	What was his age when he died?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_past_father_illness_1	52	ukbb	Illnesses of father	family_history/ukbb.parquet	NaN	NaN	Has/did your father ever suffer from? (You can...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_adopted_father_illness_1	52	ukbb	Illnesses of adopted father	family_history/ukbb.parquet	NaN	NaN	Has/did your ADOPTED father ever suffer from? ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_father_illness_2	52	ukbb	Illnesses of father	family_history/ukbb.parquet	NaN	NaN	Has/did your father ever suffer from? (You can...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_adopted_father_illness_2	52	ukbb	Illnesses of adopted father	family_history/ukbb.parquet	NaN	NaN	Has/did your ADOPTED father ever suffer from? ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_mother_alive	52	ukbb	Mother still alive	family_history/ukbb.parquet	NaN	NaN	Is your mother still alive?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
family_history_adopted_mother_alive	52	ukbb	Adopted mother still alive	family_history/ukbb.parquet	NaN	NaN	Is your ADOPTED mother still alive?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
family_history_current_mother_age	52	ukbb	Mother's age	family_history/ukbb.parquet	NaN	NaN	What is her age now?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_current_adopted_mother_age	52	ukbb	Mother's age	family_history/ukbb.parquet	NaN	NaN	What is her age now?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_mother_age_passing	52	ukbb	Mother's age at death	family_history/ukbb.parquet	NaN	NaN	What was her age when she died?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_adopted_mother_age_passing	52	ukbb	Mother's age at death	family_history/ukbb.parquet	NaN	NaN	What was her age when she died?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_past_mother_illness_1	52	ukbb	Illnesses of mother	family_history/ukbb.parquet	NaN	NaN	Has/did your mother ever suffer from? (You can...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_adopted_mother_illness_1	52	ukbb	Illnesses of adopted mother	family_history/ukbb.parquet	NaN	NaN	Has/did your ADOPTED mother ever suffer from? ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_mother_illness_2	52	ukbb	Illnesses of mother	family_history/ukbb.parquet	NaN	NaN	Has/did your mother ever suffer from? (You can...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_adopted_mother_illness_2	52	ukbb	Illnesses of adopted mother	family_history/ukbb.parquet	NaN	NaN	Has/did your ADOPTED mother ever suffer from? ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_number_full_brothers	52	ukbb	Number of full brothers	family_history/ukbb.parquet	NaN	NaN	How many brothers do you have? (Please include...	Integer	Single	int	Accruing	People	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_number_adopted_brothers	52	ukbb	Number of adopted brothers	family_history/ukbb.parquet	NaN	NaN	How many ADOPTED brothers do you have? (Please...	Integer	Single	int	Accruing	People	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_number_full_sisters	52	ukbb	Number of full sisters	family_history/ukbb.parquet	NaN	NaN	How many sisters do you have? (Please include ...	Integer	Single	int	Accruing	People	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_number_adopted_sisters	52	ukbb	Number of adopted sisters	family_history/ukbb.parquet	NaN	NaN	How many ADOPTED sisters do you have? (Please ...	Integer	Single	int	Accruing	People	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_past_siblings_illness_1	52	ukbb	Illnesses of siblings	family_history/ukbb.parquet	NaN	NaN	Have any of your brothers or sisters suffered ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_adopted_siblings_illness_1	52	ukbb	Illnesses of adopted siblings	family_history/ukbb.parquet	NaN	NaN	Have any of your ADOPTED brothers or sisters s...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_siblings_illness_2	52	ukbb	Illnesses of siblings	family_history/ukbb.parquet	NaN	NaN	Have any or your brothers or sisters suffered ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_past_adopted_siblings_illness_2	52	ukbb	Illnesses of adopted siblings	family_history/ukbb.parquet	NaN	NaN	Have any or your ADOPTED brothers or sisters s...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	1010
family_history_number_older_siblings	52	ukbb	Number of older siblings	family_history/ukbb.parquet	NaN	NaN	How many OLDER brothers/sisters do you have? (...	Integer	Single	int	Accruing	People	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
family_history_non_accidental_death	52	ukbb	Non-accidental death in close genetic family	family_history/ukbb.parquet	NaN	NaN	Have any of your mother, father, brothers or s...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
data_source	52	ukbb	Data source	family_history/ukbb.parquet	NaN	NaN	Source where data originates from.	NaN	Single	string	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
collection_timestamp	52	ukbb	Collection time	family_history/ukbb.parquet	NaN	NaN	Collection time	Datetime	Single	datetime64[ns, Asia/Jerusalem]	Accruing	NaN	NaN	Collection time	Both sexes	1/9/2019	NaN	NaN
collection_date	52	ukbb	Collection date	family_history/ukbb.parquet	NaN	NaN	Collection date	Date	Single	datetime64[ns]	Accruing	NaN	NaN	Collection time	Both sexes	1/9/2019	NaN	NaN
timezone	52	ukbb	Timezone	family_history/ukbb.parquet	NaN	NaN	Timezone	Categorical (single)	Single	category	Accruing	NaN	NaN	Collection time	Both sexes	1/9/2019	NaN	NaN