058-health_and_medical_history

Health and medical history

The Human Phenotype Project conducts comprehensive data collection through online surveys, where participants voluntarily provide information on various aspects influencing their health. This includes information about a participant’s health and medical history, captured through two lifestyle surveys.

These lifestyle surveys are modeled after the UK Biobank’s touch screen questionnaire. Participants receive the full version via email to complete on the Zoho platform, either before or after their baseline visit. A shorter, follow-up version of the questionnaire is then filled out by participants during subsequent visits.

Data availability:

The information is stored in 2 parquet files: ukbb.parquet and initial_medical.parquet

from pheno_utils import PhenoLoader

pl = PhenoLoader('health_and_medical_history')
pl

PhenoLoader for health_and_medical_history with
74 fields
3 tables: ['ukbb', 'initial_medical', 'age_sex']

Data dictionary

pl.dict

	folder_id	feature_set	field_string	relative_location	bulk_file_extension	bulk_dictionary	description_string	field_type	array	pandas_dtype	stability	units	sampling_rate	strata	sexed	debut	completed	data_coding
tabular_field_name
collection_timestamp	58	ukbb	Collection timestamp	health_and_medical_history/ukbb.parquet	NaN	NaN	Collection timestamp	Datetime	Single	datetime64[ns, Asia/Jerusalem]	Accruing	NaN	NaN	Collection time	Both sexes	1/9/2019	NaN	NaN
collection_date	58	ukbb	Collection date	health_and_medical_history/ukbb.parquet	NaN	NaN	Collection date	Date	Single	datetime64[ns]	Accruing	NaN	NaN	Collection time	Both sexes	1/9/2019	NaN	NaN
timezone	58	ukbb	Timezone	health_and_medical_history/ukbb.parquet	NaN	NaN	Timezone	Text	Single	category	Accruing	NaN	NaN	Collection time	Both sexes	1/9/2019	NaN	NaN
health_general_rating	58	ukbb	Overall health rating	health_and_medical_history/ukbb.parquet	NaN	NaN	In general how would you rate your overall hea...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100508
health_general_dissability_illness	58	ukbb	Long-standing illness, disability or infirmity	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you have any long-standing illness, disabil...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_eyes_glasses_contacts	58	ukbb	Wears glasses or contact lenses	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you wear glasses or contact lenses to corre...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_eyes_glasses_contacts_start_age	58	ukbb	Age started wearing glasses or contact lenses	health_and_medical_history/ukbb.parquet	NaN	NaN	What age did you first start to wear glasses o...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_eyes_glasses_contacts_reason	58	ukbb	Reason for glasses/contact lenses	health_and_medical_history/ukbb.parquet	NaN	NaN	Why were you prescribed glasses/contacts? (You...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100514
health_eyes_short_sight_eye	58	ukbb	Which eye(s) affected by myopia (short sight)	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by myopia (short sig...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_long_sight_eye	58	ukbb	Which eye(s) affected by hypermetropia (long s...	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by hypermetropia (lo...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_reading_glasses_eye	58	ukbb	Which eye(s) affected by presbyopia	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by presbyopia?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_astigmatism_eye	58	ukbb	Which eye(s) affected by astigmatism	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by astigmatism?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_squint_eye	58	ukbb	Which eye(s) affected by strabismus (squint)	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by strabismus (squint)?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_amblyopia_eye	58	ukbb	Which eye(s) affected by amblyopia (lazy eye)	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by amblyopia (lazy e...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_other_condition_eye	58	ukbb	Which eye(s) affected by other eye condition	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by your other eye co...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_other_problems	58	ukbb	Other eye problems	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you have any other problems with your eyes ...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100352
health_eyes_problems_doctor_diagnosis	58	ukbb	Eye problems/disorders	health_and_medical_history/ukbb.parquet	NaN	NaN	Has a doctor told you that you have any of the...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100523
health_eyes_diabetes_eye	58	ukbb	Which eye(s) affected by diabetes-related eye ...	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by diabetes related ...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_diabetes_eye_start_age	58	ukbb	Age when diabetes-related eye disease diagnosed	health_and_medical_history/ukbb.parquet	NaN	NaN	What was your age when diabetes related eye di...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_eyes_glaucoma_eye	58	ukbb	Which eye(s) affected by glaucoma	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by glaucoma?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_glaucoma_eye_start_age	58	ukbb	Age glaucoma diagnosed	health_and_medical_history/ukbb.parquet	NaN	NaN	What was your age when glaucoma was first diag...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_eyes_injury_trauma_eye	58	ukbb	Which eye(s) affected by injury or trauma resu...	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by injury or trauma ...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_injury_trauma_eye_start_age	58	ukbb	Age when loss of vision due to injury or traum...	health_and_medical_history/ukbb.parquet	NaN	NaN	What was your age when injury or trauma result...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_eyes_cataract_eye	58	ukbb	Which eye(s) are affected by cataract	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by a cataract?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_cataract_eye_start_age	58	ukbb	Age cataract diagnosed	health_and_medical_history/ukbb.parquet	NaN	NaN	What was your age when a cataract was first di...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_eyes_macular_degeneration_eye	58	ukbb	Which eye(s) affected by macular degeneration	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by macular degenerat...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_macular_degeneration_eye_start_age	58	ukbb	Age macular degeneration diagnosed	health_and_medical_history/ukbb.parquet	NaN	NaN	What was your age when macular degeneration wa...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_eyes_other_serious_condition_eye	58	ukbb	Which eye(s) affected by other serious eye con...	health_and_medical_history/ukbb.parquet	NaN	NaN	Which eye(s) are affected by the other serious...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100515
health_eyes_other_serious_condition_eye_start_age	58	ukbb	Age other serious eye condition diagnosed	health_and_medical_history/ukbb.parquet	NaN	NaN	What was your age when the other serious eye c...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_mouth_problems	58	ukbb	Mouth/teeth dental problems	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you have any of the following? (You can sel...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100538
health_general_past_year_falling	58	ukbb	Falls in the last year	health_and_medical_history/ukbb.parquet	NaN	NaN	In the last year have you had any falls?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100539
health_general_past_year_weight_change	58	ukbb	Weight change compared with 1 year ago	health_and_medical_history/ukbb.parquet	NaN	NaN	Compared with one year ago, has your weight ch...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100540
health_cancer_past_bowel_screening	58	ukbb	Ever had bowel cancer screening	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you ever had a screening test for bowel (...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_cancer_past_bowel_screening_years	58	ukbb	Most recent bowel cancer screening	health_and_medical_history/ukbb.parquet	NaN	NaN	How many years ago was the most recent one of ...	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
health_breathing_past_year_wheezing	58	ukbb	Wheeze or whistling in the chest in last year	health_and_medical_history/ukbb.parquet	NaN	NaN	In the last year have you ever had wheeze or w...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_breathing_shortness_breath_walking	58	ukbb	Shortness of breath walking on level ground	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get short of breath walking with people...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_pain_walking	58	ukbb	Leg pain on walking	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get a pain in either leg on walking?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_pain_begin_standing_sitting	58	ukbb	Leg pain when standing still or sitting	health_and_medical_history/ukbb.parquet	NaN	NaN	Does this pain ever begin when you are standin...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_calfs_pain	58	ukbb	Leg pain in calf/calves	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get this pain in your calf (calves)?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_pain_walking_uphill	58	ukbb	Leg pain when walking uphill or hurrying	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get pain when you walk uphill or hurry?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_pain_walking_normal	58	ukbb	Leg pain when walking normally	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get pain when you walk at an ordinary p...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_pain_dissapear_walking	58	ukbb	Leg pain when walking ever disappears while wa...	health_and_medical_history/ukbb.parquet	NaN	NaN	Does the pain you get while walking ever disap...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_pain_action	58	ukbb	Leg pain on walking : action taken	health_and_medical_history/ukbb.parquet	NaN	NaN	What do you do if you get pain when you are wa...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100549
health_legs_pain_change_stopping	58	ukbb	Leg pain on walking : effect of standing still	health_and_medical_history/ukbb.parquet	NaN	NaN	What happens to the pain you get while walking...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100550
health_legs_arteries_surgery	58	ukbb	Surgery on leg arteries (other than for varico...	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you ever had surgery on the arteries of y...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_legs_amputation	58	ukbb	Surgery/amputation of toe or leg	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you ever had surgery to remove any of the...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100552
health_pain_types_past_month	58	ukbb	Pain type(s) experienced in last month	health_and_medical_history/ukbb.parquet	NaN	NaN	In the last month have you experienced any of ...	Categorical (multiple)	Multiple	object	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100553
health_pain_past_3_months_headache	58	ukbb	Headaches for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had headaches for more than 3 months?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_facial	58	ukbb	Facial pains for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had facial pains for more than 3 months?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_neck_shoulders	58	ukbb	Neck/shoulder pain for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had neck or shoulder pains for more t...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_back	58	ukbb	Back pain for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had back pains for more than 3 months?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_stomach	58	ukbb	Stomach/abdominal pain for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had stomach or abdominal pains for mo...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_hip	58	ukbb	Hip pain for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had hip pains for more than 3 months?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_knee	58	ukbb	Knee pain for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had knee pains for more than 3 months?	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_past_3_months_general	58	ukbb	General pain for 3+ months	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you had pains all over the body for more ...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_chest	58	ukbb	Chest pain or discomfort	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you ever have any pain or discomfort in you...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_pain_chest_walking_normal	58	ukbb	Chest pain or discomfort walking normally	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get this pain or discomfort when you wa...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100563
health_pain_chest_walking_uphill	58	ukbb	Chest pain or discomfort when walking uphill o...	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you get this pain or discomfort when you wa...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100564
health_pain_chest_dissapear_stopping	58	ukbb	Chest pain due to walking ceases when standing...	health_and_medical_history/ukbb.parquet	NaN	NaN	Does this chest pain go away when you stand st...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_cancer_past_prostate_screening	58	ukbb	Ever had prostate specific antigen (PSA) test	health_and_medical_history/ukbb.parquet	NaN	NaN	Have you ever had a blood test for prostate ca...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	1/9/2019	NaN	100349
health_cancer_past_prostate_screening_years	58	ukbb	Time since last prostate specific antigen (PSA...	health_and_medical_history/ukbb.parquet	NaN	NaN	How many years ago was your last test?	Integer	Single	int	Accruing	Years	NaN	Primary	Both sexes	1/9/2019	NaN	NaN
skin_current_sunscreen_use	58	ukbb	Use of sun/uv protection	health_and_medical_history/ukbb.parquet	NaN	NaN	Do you wear sun protection (e.g. sunscreen lot...	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2/17/2020	NaN	100536
oralheatlh_bleeding_gums	58	initial_medical	Oral heatlh bleeding gums	health_and_medical_history/initial_medical.par...	NaN	NaN	Oral heatlh bleeding gums	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2018-11-21	NaN	021_01
oralheatlh_abscess_or_gingivitis	58	initial_medical	Oral heatlh periodontal abscess or gingivitis	health_and_medical_history/initial_medical.par...	NaN	NaN	Oral heatlh periodontal abscess or gingivitis	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2018-11-21	NaN	021_02
oralheatlh_antibiotics_for_gingivitis	58	initial_medical	Oral heatlh taken antibiotics for gingivitis	health_and_medical_history/initial_medical.par...	NaN	NaN	Oral heatlh taken antibiotics for gingivitis	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2018-11-21	NaN	021_02
oralheatlh_bad_breath	58	initial_medical	Oral heatlh halitosis	health_and_medical_history/initial_medical.par...	NaN	NaN	Oral heatlh halitosis	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2018-11-21	NaN	021_03
oralheatlh_teeth_mobility_lately	58	initial_medical	Oral heatlh teeth mobility lately	health_and_medical_history/initial_medical.par...	NaN	NaN	Oral heatlh teeth mobility lately	Categorical (single)	Single	int	Accruing	NaN	NaN	Primary	Both sexes	2018-11-21	NaN	021_04
eye_health_eyeglasses_age	58	initial_medical	Age started wearing glasses	health_and_medical_history/initial_medical.par...	NaN	NaN	Age started wearing glasses	Integer	Single	float	Accruing	years	NaN	Primary	Both sexes	2018-11-21	NaN	NaN
eye_health_decreased_eyesight_age	58	initial_medical	Age when eyesight decreased	health_and_medical_history/initial_medical.par...	NaN	NaN	Age when eyesight decreased	Integer	Single	float	Accruing	years	NaN	Primary	Both sexes	2018-11-21	NaN	NaN
eye_health_ona_age	58	initial_medical	Eye health AMD age	health_and_medical_history/initial_medical.par...	NaN	NaN	Eye health AMD age	Integer	Single	float	Accruing	years	NaN	Primary	Both sexes	2018-11-21	NaN	NaN
eye_health_conjunctivitis_age	58	initial_medical	Eye health conjunctivitis age	health_and_medical_history/initial_medical.par...	NaN	NaN	Eye health conjunctivitis age	Integer	Single	float	Accruing	years	NaN	Primary	Both sexes	2018-11-21	NaN	NaN
eye_health_surgery_improve_vision_age	58	initial_medical	Eye health LASIK surgery age	health_and_medical_history/initial_medical.par...	NaN	NaN	Eye health LASIK surgery age	Integer	Single	float	Accruing	years	NaN	Primary	Both sexes	2018-11-21	NaN	NaN
collection_timestamp	58	initial_medical	Collection timestamp	health_and_medical_history/initial_medical.par...	NaN	NaN	Collection timestamp	Datetime	Single	datetime64[ns, Asia/Jerusalem]	Accruing	NaN	NaN	Collection time	Both sexes	2018-11-21	NaN	NaN
collection_date	58	initial_medical	Collection date	health_and_medical_history/initial_medical.par...	NaN	NaN	Collection date	Date	Single	datetime64[ns]	Accruing	NaN	NaN	Collection time	Both sexes	2018-11-21	NaN	NaN
timezone	58	initial_medical	Timezone	health_and_medical_history/initial_medical.par...	NaN	NaN	Timezone	Text	Single	string	Accruing	NaN	NaN	Collection time	Both sexes	2018-11-21	NaN	NaN
data_source	58	initial_medical	Data source	health_and_medical_history/initial_medical.par...	NaN	NaN	Data source of survey information	Text	Single	string	Accruing	NaN	NaN	Auxiliary	Both sexes	2018-11-21	NaN	NaN